PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539054.1_FGP005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 402aa    MW: 44258.8 Da    PI: 7.7596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539054.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-12267292126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  KN539054.1_FGP005 267 YQPDICKDYKETGYCGYGDSCKFMHD 292
                        66789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-9265297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878266294IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7266293IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-12267297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.5E-10339371IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.32E-10343370No hitNo description
PROSITE profilePS500898.58344367IPR001841Zinc finger, RING-type
PfamPF134451.1E-6344368IPR027370RING-type zinc-finger, LisH dimerisation motif
CDDcd001621.67E-5344370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MRASIPTRRS PNRRNASVAV SNVHSGVSRW PRYTSSSECL DSISISEMPR SVRSWPVMVR  60
MNTASGRRSS SVYSSVPRSG IGRWLAVGVL AGVDGHVQRR SDPDDGDARL DQRRHCATIH  120
QLAQSSINLR RDPDDGATVT VVISGHHARP LPRRFQYESS RTIQASTDSR ATATLETETE  180
FDRDARAIRE RQLKQAEESL KKNPSSSPAS GSISGSGSGE VYKGIHGYKD YKAGFRREHT  240
VSSEKAGGSH GPLRASAHIR LSARFDYQPD ICKDYKETGY CGYGDSCKFM HDRGDYKSGW  300
QIEKEWEEAE KARKRRIAMG GDGSDDEAGE EDDDDDEEAL PFACYICREP FVDPVVTKCK  360
HYFCEHCALK VSAEGFGALV PQSSGSTRIP DSSTTSHAGG GD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622931.11e-126PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-128C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0E0CJH61e-133A0A0E0CJH6_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g19804.11e-125(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-93C3H family protein